Graduate Student Publications

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Program MTA Name Title Journal Preceptors Published PubMedLink
GGS MDPhD Huynh, Jimmy Chromatin landscape defined by repressive histone methylation during oligodendrocyte differentiation Journal of Neuroscience Patrizia Casaccia 01/07/2015 Link
GGS MDPhD Huynh, Jimmy Combinatorial actions of Tgfβ and Activin ligands promote oligodendrocyte development and CNS myelination Development Patrizia Casaccia 06/01/2014 Link
GGS MDPhD Huynh, Jimmy Common dysregulation network in the human prefrontal cortex underlies two neurodegenerative diseases Molecular Systems Biology Patrizia Casaccia 07/30/2014 Link
GGS MDPhD Huynh, Jimmy Cerebrospinal fluid ceramides from patients with multiple sclerosis impair neuronal bioenergetics Brain Patrizia Casaccia 08/01/2014 Link
GGS MDPhD Huynh, Jimmy Epigenome-wide differences in pathology-free regions of multiple sclerosis-affected brains Nature Neuroscience Patrizia Casaccia, Andrew J. Sharp 1/1/2014 Link
GGS MDPhD Josowitz, Rebecca Identification and purification of human induced pluripotent stem cell-derived atrial-like cardiomyocytes based on sarcolipin expression. PLOS One Bruce D. Gelb 07/10/2014 Link
GGS MDPhD Mullokandov, Gavriel Hepatitis C virus genetics affects miR-122 requirements and response to miR-122 inhibitors Nature Communications Brian D. Brown 11/18/2014 Link
GGS MDPhD Mullokandov, Gavriel High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nature Methods Brian Brown 7/1/2012 Link
GGS MDPhD Zhang, David A hepatic stellate cell gene expression signature associated with outcomes in hepatitis C cirrhosis and hepatocellular carcinoma after curative resection Gut Scott L. Friedman 06/04/2015 Link
GGS PhD Barbosa, Mafalda Autosomal dominant spastic paraplegias: a review of 89 families resulting from a Portuguese survey JAMA Neurology Andrew Sharp 2013 Link
GGS PhD Barbosa, Mafalda Living with inborn errors of cholesterol biosynthesis: lessons from adult patients Clinical Genetics Andrew Sharp 2014 Link
GGS PhD Barbosa, Mafalda Variant Rett syndrome in a girl with a pericentric X-chromosome inversion leading to epigenetic changes and overexpression of the MECP2 gene International Journal of Developmental Neuroscience Andrew Sharp 2015 Link
GGS PhD Barbosa, Mafalda Recurrent copy number variations as risk factors for neurodevelopmental disorders: critical overview and analysis of clinical implications Journal of Medical Genetics Andrew Sharp 2015 Link
GGS PhD Barbosa, Mafalda Identification of novel genetic causes of Rett syndrome-like phenotypes Journal of Medical Genetics Andrew Sharp 2016 Link
GGS PhD Beaulaurier, John Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes Nature Communications Gang Fang 06/15/2015 Link
GGS PhD Beaulaurier, John Evolutionary dynamics of Vibrio cholerae O1 following a single-source introduction to Haiti. mBio Ali Bashir 07/02/2013 Link
GGS PhD Chaoprang Herrera, Phapichaya Muscle invasive bladder cancer: examining survivor burden and unmet needs The Journal of Urology The Journal of Urology 7/30/2013 Link
GGS PhD Dincer, Aslihan Conserved Chromosome 2q31 Conformations Are Associated with Transcriptional Regulation of GAD1 GABA Synthesis Enzyme and Altered in Prefrontal Cortex of Subjects with Schizophrenia. The Journal of Neuroscience Schahram Akbarian 7/17/2013 Link
GGS PhD Fu, Shih-Chen Synaptic, transcriptional and chromatin genes disrupted in autism Nature Joseph Buxbaum 10/29/2014 Link
GGS PhD Gopalakrishnan, Kalpana Effect of maternal exposure to endocrine disrupting chemicals on reproduction and mammary gland development in female sprague-dawley rats Reproductive Toxicology Jia Chen 12/29/2014 Link
GGS PhD hasson, dan ATRX-mediated chromatin association of histone variant macroH2A1 regulates ?-globin expression. Genes & Development Peter Warburton 3/1/2012 Link
GGS PhD hasson, dan MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency. Nature Communications Peter warburton 3/5/2013 Link
GGS PhD hasson, dan The octamer is the major form of CENP-A nucleosomes at human centromeres. Nature Structural & Molecular Biology Peter Warburton 6/1/2013 Link
GGS PhD Huynh, Jimmy Epigenetic mechanisms in multiple sclerosis: implications for pathogenesis and treatment. Lancet Neurology Patrizia Casaccia 2/12/2013 Link
GGS PhD Jayaprakash, Anitha Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing. Nucleic Acids Research Ravi Sachidanandam / Andrew Chess 11/11/2011 Link
GGS PhD Jayaprakash, Anitha Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells. Current Biology Ravi Sachidanandam / Andrew Chess 2/25/2011 Link
GGS PhD Jayaprakash, Anitha High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries. Nature Methods Ravi Sachidanandam / Andrew Chess 7/1/2012 Link
GGS PhD Jayaprakash, Anitha MiST: a new approach to variant detection in deep sequencing datasets. Nucleic Acids Research Ravi Sachidanandam / Andrew Chess 7/1/2013 Link
GGS PhD Shen, Nan The microbiome of uncontacted Amerindians. Sci Adv Dr. Jose Clemente 04/03/2015 Link
GGS PhD Shen, Nan Single molecule-level detection and long read-based phasing of epigenetic variations in bacterial methylomes. Nat Commun Dr. Fang Gang 06/15/2015 Link
GGS PhD Shen, Nan Engineering the Microbiome: a Novel Approach to Immunotherapy for Allergic and Immune Diseases. Curr Allergy Asthma Rep Dr. Jose Clemente 07/15/2015 Link
GGS PhD Wang, Zichen Signaling Networks among Stem Cell Precursors, Transit-Amplifying Progenitors, and their Niche in Developing Hair Follicles Cell Reports Avi Ma’ayan 03/29/2016 Link
GGS PhD Wang, Zichen Drug-induced adverse events prediction with the LINCS L1000 data Bioinformatics Avi Ma’ayan 04/01/2016 Link
GGS PhD Wang, Zichen Dynamics of the discovery process of protein-protein interactions from low content studies BMC Systems Biology Avi Ma’ayan PhD 06/06/2015 Link
GGS PhD Wang, Zichen Abstraction for data integration: Fusing mammalian molecular, cellular and phenotype big datasets for better knowledge extraction Computational Biology and Chemistry Avi Ma’ayan PhD 08/18/2015 Link
GGS PhD Wang, Zichen Lean Big Data integration in systems biology and systems pharmacology Trends in Pharmacological Sciences Avi Ma’ayan PhD 09/01/2014 Link
GGS PhD Wang, Zichen An Integrated Transcriptome Atlas of Embryonic Hair Follicle Progenitors, Their Niche, and the Developing Skin Developmental Cell Avi Ma’ayan PhD 09/14/2015 Link
GGS PhD Wang, Zichen Lean Big Data integration in systems biology and systems pharmacology Trends in pharmacological sciences Avi Ma’ayan 09/30/2014 Link
GGS PhD Wang, Zichen Histone H3.3 and its proteolytically processed form drive a cellular senescence programme Nature communications Avi Ma’ayan 11/04/2014 Link
GGS PhD Wang, Zichen Drug/Cell-line Browser: interactive canvas visualization of cancer drug/cell-line viability assay datasets Bioinformatics Avi Ma’ayan PhD 11/15/2014 Link

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