PhD & MDPhD Publications

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2014

MTA
LastName
FirstName
Title
JournalName
Preceptors
CAB
Qadeer
Zulekha
Decreased Expression of the Chromatin Remodeler ATRX Associates with Melanoma Progression.
Journal of Investigatve Dermatology
Emily Bernstein
DSCB
Bala-Tannan
Neeta
DNA methylation profiling in X;autosome translocations supports a role for L1 repeats in the spread of X chromosome inactivation
Human Molecular Genetics
Andrew Sharp
DSCB
Liang
Raymond
Stem Cells, Redox Signaling, and Stem Cell Aging
Antioxidants & Redox Signaling
Ghaffari, S
DSCB
Tsai
Su-Yi
Wnt/β-catenin signaling in dermal condensates is required for hair follicle formation
Developmental Biology
Michael Rendl
DSCB
Zelenko
Zara
Diabetes and Cancer.
Endocrinology and Metabolism Clinics of North America
Derek LeRoith
GGS
Huynh
Jimmy
Epigenome-wide differences in pathology-free regions of multiple sclerosis-affected brains
Nature Neuroscience
Patrizia Casaccia, Andrew J. Sharp
IMM
Mathern
Douglas
Mouse and human Notch-1 regulate mucosal immune responses.
Mucosal Immunology
Stephanie Dahan
MIC
Edwards
Megan
The Marburg viurs VP24 protein interacts with Keap1 to activate the cytoprotective antioxidant response pathway
Cell Reports
Christopher F Basler
N/A
Papa
Luena
SirT3 Regulates the Mitochondrial Unfolded Protein Response.
Molecular and Cellular Biology
Germain D
N/A
Papa
Luena
SOD2 to SOD1 switch in breast cancer.
The Journal of Biological Chemistry
Germain D
NEU
Miller
Michael
Parental THC exposure leads to compulsive heroin-seeking and altered striatal synaptic plasticity in the subsequent generation
Neuropsychopharmacology
Yasmin L Hurd
NEU
Miller
Michael
Trajectory of adolescent cannabis use on addiction vulnerability
Neuropharmacology
Yasmin L. Hurd
NEU
Nikitczuk
Jessica
N-cadherin regulates molecular organization of excitatory and inhibitory synaptic circuits in adult hippocampus in vivo
Hippocampus
George W. Huntley
NEU
Riceberg
Justin
Reward stability determines the role of orbitofrontal cortex to adaptive behavior
The Journal of Neuroscience
Matthew Shapiro
NEU
Uppal
Neha
Neuropathology of the posteroinferior occipitotemporal gyrus in children with autism.
Molecular Autism
Patrick R. Hof
SBDT
Bouhaddou
Mehdi
Dimerization-based Control of Cooperativity
Molecular Biosystems
Marc Birtwistle
SBDT
Cook
Jason
Abnormal muscle mechanosignaling triggers cardiomyopathy in mice with Marfan syndrome
Journal of Clinical Investigation
Francesco Ramirez
SBDT
Cook
Jason
Clinical, diagnostic, and therapeutic aspects of the marfan syndrome
Adv Exp Med Biol.
Francesco Ramirez
SBDT
Cummins
Megan
Comprehensive analyses of ventricular myocyte models identify targets exhibiting favorable rate dependence
PLOS Computational Biology
Eric A Sobie
SMD
Tang
Jun
A statin-loaded reconstituted high-density lipoprotein nanoparticle inhibits atherosclerotic plaque inflammation
Nature Communications
Fayad ZA

2013

MTA
LastName
FirstName
Title
JournalName
Preceptors
CAB
Jahanshahi
Maryam
Alcohol interacts with genetic alteration of the hippo tumor suppressor pathway to modulate tissue growth in Drosophila.
PLoS One
Cathie Pfleger
CAB
Kuntz
K
Initiation of DNA damage responses through XPG-related nucleases.
Free PMC Article
Matthew O'Connell
CAB
Merzel Schachter
Miriam
A Cdk7-Cdk4 T-loop phosphorylation cascade promotes G1 progression
Molecular Cell
Robert P. Fisher, MD, PhD
CAB
Pendse
Jay
A Drosophila functional evaluation of candidates from human genome-wide association studies of type 2 diabetes and related metabolic traits identifies tissue-specific roles for dHHEX.
BMC Genomics
Ross Cagan
CAB
Wu
Hsan-Au
MAP Kinase Signaling Mediates Phosphorylation of Polycomb Ortholog Cbx7.
The Journal of Biological Chemistry
Emily Bernstein
DSCB
Bieker
James
EKLF/KLF1, a tissue-restricted integrator of transcriptional control, chromatin remodeling, and lineage determination
Molecular and Cell Biology
Bieker
DSCB
Qiu
Jiajing
Induction of a hemogenic program in mouse fibroblasts
Cell Stem Cell
Moore, K
DSCB
Romer
Anthony
Smooth muscle fascicular reorientation is required for esophageal morphogenesis and dependent on Cdo.
The Journal of Cell Biology
Robert Krauss
DSCB
Saunders
Arven
Concise Review: Pursuing Self-Renewal and Pluripotency with the Stem Cell Factor Nanog
Stem Cells
DSCB
Saunders
Arven
NANOG-dependent function of TET1 and TET2 in establishment of pluripotency
Nature
Jianlong Wang
GGS
Chaoprang Herrera
Phapichaya
Muscle invasive bladder cancer: examining survivor burden and unmet needs
The Journal of Urology
The Journal of Urology
GGS
Dincer
Aslihan
Conserved Chromosome 2q31 Conformations Are Associated with Transcriptional Regulation of GAD1 GABA Synthesis Enzyme and Altered in Prefrontal Cortex of Subjects with Schizophrenia.
The Journal of Neuroscience
Schahram Akbarian
GGS
hasson
dan
The octamer is the major form of CENP-A nucleosomes at human centromeres.
Nature Structural & Molecular Biology
Peter Warburton
GGS
hasson
dan
MacroH2A histone variants act as a barrier upon reprogramming towards pluripotency.
Nature Communications
Peter warburton
GGS
Huynh
Jimmy
Epigenetic mechanisms in multiple sclerosis: implications for pathogenesis and treatment.
Lancet Neurology
Patrizia Casaccia
GGS
Jayaprakash
Anitha
MiST: a new approach to variant detection in deep sequencing datasets.
Nucleic Acids Research
Ravi Sachidanandam / Andrew Chess
IMM
Bonito
Anthony
Medullary thymic epithelial cell depletion leads to autoimmune hepatitis
The Journal of Clinical Investigation
Konstantina Alexandropoulos
IMM
Chow
Andrew
CD169⁺ macrophages provide a niche promoting erythropoiesis under homeostasis and stress.
Nature Medicine
Miriam Merad
IMM
Chow
Andrew
Tissue-resident macrophages self-maintain locally throughout adult life with minimal contribution from circulating monocytes.
Immunity
Miriam Merad
IMM
Lavin
Yonit
Macrophages: Gatekeepers of Tissue Integrity
Cancer Immunology Research
Miriam Merad
IMM
Nair-Gupta
Priyanka
An Updated View of the Intracellular Mechanisms Regulating Cross-Presentation
Frontiers in Immunology
Julie Magarian Blander
IMM
van der Touw
William
Cutting edge: Receptors for C3a and C5a modulate stability of alloantigen-reactive induced regulatory T cells
Journal of Immunology
Peter Heeger
IMM
van der Touw
William
Signaling through C5a receptor and C3a receptor diminishes function of murine natural regulatory T cells
The Journal of Experimental Medicine
Peter Heeger
IMM
van der Touw
William
Cutting edge: Receptors for C3a and C5a modulate stability of alloantigen-reactive induced regulatory T cells
Journal of Immunology
Heeger, PS
IMM
van der Touw
William
Signaling through C5a receptor and C3a receptor diminishes function of murine natural regulatory T cells
The Journal of Experimental Medicine
Heeger PS
MIC
Chua
Mark
Influenza A virus utilizes suboptimal splicing to coordinate the timing of infection
Cell Reports
tenOever, BR
MIC
Gardner
Thomas
Neutralizing antibodies against previously encountered influenza virus strains increase over time: a longitudinal analysis.
Science Translational Medicine
Palese, Tortorella
MIC
Letko
Michael
Vif Proteins from Diverse Primate Lentiviral Lineages Use the Same Binding Site in APOBEC3G
Journal of Virology
Marcel Ooms, Viviana Simon
MIC
Varble
Andrew
An in vivo RNAi screening approach to identify host determinants of virus replication.
Cell Host & Microbe
Benjamin R. tenOever
MIC
Varble
Andrew
An in vivo RNAi screening approach to identify host determinants of virus replication
Cell Host & Microbe
tenOever, BR
N/A
Finelli
Mattea
Differential Phosphorylation of Smad1 Integrates BMP and NGF Signaling by Regulating ERK/DUSP during Axon Development.
Cell Reports
Jenny Hongyan Zou
NEU
Gagnidze
Khatuna
GPR171 is a hypothalamic G protein-coupled receptor for BigLEN, a neuropeptide involved in feeding.
Proc Natl Acad Sci U S A.
Lakshmi Devi
NEU
Golden
Sam
Epigenetic regulation of RAC1 induces synaptic remodeling in stress disorders and depression.
Nature Medicine
Russo, SJ
NEU
Hof
Patrick
Anterior insular cortex and emotional awareness.
The Journal of Comparative Neurology
NEU
Miller
Michael
Cannabis use during adolescent development: susceptibility to psychiatric illness
Frontiers in Psychiatry
Yasmin L. Hurd
NEU
Miller
Michael
Limbic activation to novel versus familiar food cues predicts food preference and alcohol intake.
Brain Research
Yasmin L Hurd
NEU
Stockton
Steven
An integrated quantitative proteomics and systems biology approach to explore synaptic protein profile changes during morphine exposure.
Neuropsychopharmacology
Lakshmi Devi
NEU
Walsh
Jessica
Stress and CRF gate neural activation of BDNF in the mesolimbic reward pathway
Nature Neuroscience
Ming-Hu Han
NEU
Walsh
Jessica
Rapid regulation of depression-related behaviours by control of midbrain dopamine neurons
Nature
Ming-Hu Han
NEU
Xuan
Zhao
Presenilin-1/γ-secretase controls glutamate release, tyrosine phosphorylation, and surface expression of N-methyl-D-aspartate receptor (NMDAR) subunit GluN2B
The Journal of Biological Chemistry
Nikolaos K. Robakis
SBDT
Anderson
Sarah Ann
Impaired periamygdaloid-cortex prodynorphin is characteristic of opiate addiction and depression
The Journal of Clinical Investigation
Yasmin Hurd
SBDT
Braun
David
Cytokine response is determined by duration of receptor and signal transducers and activators of transcription 3 (STAT3) activation
The Journal of Biological Chemistry
Sealfon, SC
SBDT
Wang
Qian
β-catenin regulates GnRH-induced FSHβ gene expression
Molecular Endocrinology
Stuart Sealfon, MD
SBDT
Wang
Qian
Outside the box signaling: Secreted factors modulate GnRH receptor-mediated gonadotropin regulation
Molecular and cellular endocrinology
Stuart Sealfon, MD

2012

MTA
LastName
FirstName
Title
JournalName
Preceptors
CAB
Liu
Peter (Hongdau)
PIDD death-domain phosphorylation by ATM controls prodeath versus prosurvival PIDDosome signaling
Molecular Cell
Samuel Sidi
DSCB
Bieker
James
Functional interactions between erythroid Krüppel-like factor (EKLF/KLF1) and protein phosphatase PPM1B/PP2Cβ
The Journal of Biological Chemistry
Bieker
DSCB
Kou
Yan
Patterns and rates of exonic de novo mutations in autism spectrum disorders.
Nature
Ma'ayan, A; Buxbaum, JD
DSCB
Saunders
Arven
Zfp281 mediates Nanog autorepression through recruitment of the NuRD complex and inhibits somatic cell reprogramming
Proceedings of the National Academy of Sciences of the USA
Jianlong Wang
DSCB
Sennett
Rachel
Mesenchymal-epithelial interactions during hair follicle morphogenesis and cycling
Seminars in Cell and Developmental Biology
Michael Rendl
GGS
hasson
dan
ATRX-mediated chromatin association of histone variant macroH2A1 regulates α-globin expression.
Genes & Development
Peter Warburton
GGS
Jayaprakash
Anitha
High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries.
Nature Methods
Ravi Sachidanandam / Andrew Chess
GGS
Mullokandov
Gavriel
High-throughput assessment of microRNA activity and function using microRNA sensor and decoy libraries.
Nature Methods
Brian Brown
IMM
Kent
Andrew
Simultaneous targeting of Toll- and Nod-like receptors induces effective tumor-specific immune responses
Science Translational Medicine
Julie Magarian Blander
IMM
Torchinsky
Miriam
Revisiting the old link between infection and autoimmune disease with commensals and T helper 17 cells
Immunologic Research
Julie Magarian Blander
MIC
Durham
Natasha
Neutralization resistance of virological synapse-mediated HIV-1 Infection is regulated by the gp41 cytoplasmic tail.
Journal of Virology
Benjamin K. Chen
MIC
Edwards
Megan
Structural basis for Marburg virus VP35-mediated immune evasion mechanisms
PNAS
Christopher F Basler
N/A
St. Amour
Courtney
Separate domains of fission yeast Cdk9 (P-TEFb) are required for capping enzyme recruitment and primed (Ser7-phosphorylated) Rpb1 carboxyl-terminal domain substrate recognition
Molecular and Cellular Biology
Robert Fisher
NEU
Bambah-Mukku
Dhananjay
Glucocorticoid receptors recruit the CaMKII [alpha]-BDNF-CREB pathways to mediate memory consolidation
Nature Neuroscience
Cristina M. Alberini
NEU
Bushlin
Ittai
Dimerization with cannabinoid receptors allosterically modulates delta opioid receptor activity during neuropathic pain.
PLoS One.
Lakshmi Devi
NEU
Bushlin
Ittai
Receptor heteromerization expands the repertoire of cannabinoid signaling in rodent neurons.
PLoS One.
Lakshmi Devi
NEU
Friedman
Lauren
Disrupted autophagy leads to dopaminergic axon and dendrite degeneration and promotes presynaptic accumulation of a-synuclein and LRRK2 in the brain
The Journal of Neuroscience
Zhenyu Yue
NEU
Hof
Patrick
Anterior insular cortex is necessary for empathetic pain perception
Brain
NEU
Stockton
Steven
Dimerization with cannabinoid receptors allosterically modulates delta opioid receptor activity during neuropathic pain.
PLoS One
Lakshmi Devi
NEU
Walsh
Jessica
Rapid regulation of depression-related behaviours by control of midbrain dopamine neurons
Nature
Ming-Hu Han
SBDT
Choi
SoonGang
G proteins and autocrine signaling differentially regulate gonadotropin subunit expression in pituitary gonadotrope
The Journal of Biological Chemistry
Sealfon, SC
SBDT
Cook
Jason
Generation of Fbn1 conditional null mice implicates the extracellular microfibrils in osteoprogenitor recruitment
Genesis
Francesco Ramirez
SBDT
Miller
Lydia
Dimerization with cannabinoid receptors allosterically modulates delta opioid receptor activity during neuropathic pain
PLoS One.
Lakshmi Devi
SBDT
Sobie
Eric
Exploiting mathematical models to illuminate electrophysiological variability between individuals
The Journal of Physiology
Eric Sobie

2011

MTA
LastName
FirstName
Title
JournalName
Preceptors
GGS
Jayaprakash
Anitha
Identification and remediation of biases in the activity of RNA ligases in small-RNA deep sequencing.
Nucleic Acids Research
Ravi Sachidanandam / Andrew Chess
GGS
Jayaprakash
Anitha
Kinetic analysis reveals the fate of a microRNA following target regulation in mammalian cells.
Current Biology
Ravi Sachidanandam / Andrew Chess
IMM
Nair-Gupta
Priyanka
Co-ordination of incoming and outgoing traffic in antigen-presenting cells by pattern recognition receptors and T cells
Traffic
Julie Magarian Blander
N/A
Merrick
Karl
Switching Cdk2 on or off with small molecules to reveal requirements in human cell proliferation
Molecular Cell
Robert Fisher
NEU
Friboug
Miguel
Decoding the signaling of a GPCR heteromeric complex reveals a unifying mechanism of action of antipsychotic drugs.
Cell
Stuart Sealfon
NEU
Gagnidze
Khatuna
Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord.
J Neurochem.
Lakshmi Devi
NEU
Stockton
Steven
Chronic morphine alters the presynaptic protein profile: identification of novel molecular targets using proteomics and network analysis.
PLoS One.
Lakshmi Devi
SBDT
Abul-Husn
Noura
Chronic morphine alters the presynaptic protein profile: identification of novel molecular targets using proteomics and network analysis.
PLoS One.
Lakshmi Devi
SBDT
Miller
Lydia
Mice deficient in endothelin-converting enzyme-2 exhibit abnormal responses to morphine and altered peptide levels in the spinal cord.
J Neurochem.
Lakshmi Devi
SMD
Fribourg
Miguel
Decoding the signaling of a GPCR heteromeric complex reveals a unifying mechanism of action of antipsychotic drugs
Cell
Sealfon SC

2010

MTA
LastName
FirstName
Title
JournalName
Preceptors
DSCB
Chen
Joy
Design of embedded chimeric peptide nucleic acids that efficiently enter and accurately reactivate gene expression in vivo
Proceedings of the National Academy of Sciences
Bieker
IMM
Torchinsky
Miriam
Infection and apoptosis as a combined inflammatory trigger.
Current Opinion in Immunology
Julie Magarian Blander
IMM
Torchinsky
Miriam
T helper 17 cells: discovery, function, and physiological trigger.
Cellular and Molecular Life Sciences
Julie Magarian Blander
SBDT
Cook
Jason
Differential effects of alendronate and losartan therapy on osteopenia and aortic aneurysm in mice with severe Marfan syndrome
Human Molecular Genetics
Francesco Ramirez
SBDT
Cook
Jason
Drug-based therapies for vascular disease in Marfan syndrome: from mouse models to human patients
Mount Sinai Journal of Medicine
Francesco Ramirez

2009

MTA
LastName
FirstName
Title
JournalName
Preceptors
IMM
Torchinsky
Miriam
Innate recognition of infected apoptotic cells directs TH17 cell differentiation
Nature
Julie Magarian Blander

 

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